Reference Guide

• From FASTQ to matrix
  • Mapping
  • Quality check and plotting
  • Filtering
• Chromosome class
  • Load chromosome
  • ExperimentList class
• Experiment class
  • Load experiment
• HiC_data class
• TAD detection functions
• TAD clustering
• Parsers
• Boundary Aligner
• Alignment class
• IMPoptimizer class
• IMPmodel class
• StructuralModels class
• Utilities